GPO domain setup Windows 2008 R2 server

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Job Description

We have a few Windows 2008 R2 servers in a Domain. These servers run an application that is used by users through remote desktop. The Domain was added recently. Before the Domain we had configured GPO settings to control the environments for the users so that, for example, they couldn’t see files and folders of the other users or go to Administrative Tools and Control Panel through the Start button. After the Domain was added, new users are able to go to Administrative Tools, etc.
We are looking for help in managing the remote users’ environment through Domain GPO settings.